rs30976482 SNP Detail

Summary

• ID
  rs30976482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143815456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGACCC TTTGAAATGA
  TGGTAGAGAA CTGAAATACA GTAAGTAAGC TAGAGAGGGG CTAGACCTGG GCTTGCAGAG
  TGACTTGCAA AAACTGCTAA CTGGTACCTT AGACAGATGG ACTGTCTGAA ACAATTTGCA
  TGATTGATGT GAGCAACACT CACTCATACA AAGCTCAAAG CTCAGAACTG GCAAATTGTT
  Y
  GAATTTTAGT CATGAAGCAG CTAAGACAAA GGATGAAGTG AAGCAAGCCT TCTACCCACG
  GCTGGGGGAG AATTTGCTCA TGCTTTTCAT AAGAAAAAGG AAAGCTGTTT TCTCTCTCTC
  CTTAAGGGGG AAAAAAAAGA TCAGGGTAGT GGCTCTGACA GATGAGAAGG AAGTGCAGGC
  AGGATGTCTC TCATCAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49689008	NES12985196	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30976482					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49689008	NES12985196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143815456 () rs orientation: forward

Symbol	Name	Function Class
Gm41964	predicted gene, 41964	within coordinates
Rr419966	regulatory region 419966	961 bp distal
Rr419967	regulatory region 419967	773 bp distal
Rr419968	regulatory region 419968	1765 bp proximal