rs30976100 SNP Detail

Summary

• ID
  rs30976100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68844236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTCCTCT CGTTTTTAAT
  AGGACAACGA GATTTAAAGA ACTGGGAGAA AGGCAGACAT AGTGGCTAGT AATCCTAGCA
  CTCAGCAGTG AGAGGCAGGG GGATGACTAT GAGCTCAAGG TCAACTTGGG CTACATAGTG
  AGAAGTAGGC CAGCTTAGAT TAGAGAAACA CCTTGCCTAA AGAAGCAGAA CCAAAACAAA
  R
  CTGGGGCAAG TGAAGACACG TCTACAACTG AAGCTGTTTC CCACTTCAAA TGCCTTTTTA
  TTCTCAGTAA CTCTCATAGA ACCAATTCTG GTTTTAAGAC ACAGTCTTGA ACTAGCCAAG
  ACAGTCTTGC TGTCAAGTAG AGTTCTAGTT TGGCCTTGAA GTAGCTATAT AGGTGTTGAT
  GGCCTTAGAC TCCTGATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47003311	NES10784043	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30976100					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003311	NES10784043	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68844236 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift80	intraflagellar transport 80			Intron
				Noncoding-Transcript-Variant
Rr578096	regulatory region 578096			1214 bp distal
Rr578097	regulatory region 578097			1169 bp distal