rs30974464 SNP Detail

Summary

• ID
  rs30974464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68841949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCACCATC GTGACGACCA
  TGTTTCTCGG TAATTAAATG ACAGTCTGAC TCAGCCCCTG CTCTGTGCTC CAGCTTCCTC
  TTCCTGTGAC TGCCCAGCCC CCATCGCCCG CCCAGCAGCT TCAGTCCTGT TCTGGCTACT
  TACAGGTACC TCTGGGCTAG AAAACCTGCT AAAGACCAGC ACTAAGCTGC CTCCATGCAG
  R
  AGAGGAGATG AGTTAAGGTG TGGCTTTGAT GCAGAGGGTT TATATGCATG TTTAGGTAAA
  TAACTACATT TCCACACTTC GCTAAGTCTT ATTGGGTAGC TTTCCTACAC CTGACCTTGG
  GCAAAGTGCA GAGATGTTAT TGTCATAGCT TTTCTAAGTT TGACTCAGAA GGGGGTCACT
  GCCCTTAATA AATCGACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47003285	NES10784123	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30974464					SNP	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003285	NES10784123	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68841949 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift80	intraflagellar transport 80			Intron
				Noncoding-Transcript-Variant
Rr578096	regulatory region 578096			1052 bp proximal
Rr578097	regulatory region 578097			1097 bp proximal