rs30973580 SNP Detail

Summary

• ID
  rs30973580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68841745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTATGAAC ATACTCAATA
  AACTTATAAA TAATTTATAA AATTATTTGG AATAAAAGAC ATTTGAAAAA CAGGGCCTTT
  AGCTAGCTGA CTCTTGCCTT TTAACTGGTA AAACAACATC TTGAAAAGTT ATGATGGAAG
  TAAAGCACGT TTCGTTTCAT TAAATGATGA CAAAATTTGA TGCAACATTT CCTTGACTAC
  Y
  CAGGATCACC ATCGTGACGA CCATGTTTCT CGGTAATTAA ATGACAGTCT GACTCAGCCC
  CTGCTCTGTG CTCCAGCTTC CTCTTCCTGT GACTGCCCAG CCCCCATCGC CCGCCCAGCA
  GCTTCAGTCC TGTTCTGGCT ACTTACAGGT ACCTCTGGGC TAGAAAACCT GCTAAAGACC
  AGCACTAAGC TGCCTCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47003281	NES10784121	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30973580					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003281	NES10784121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68841745 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift80	intraflagellar transport 80			Intron
				Noncoding-Transcript-Variant
Rr578096	regulatory region 578096			1256 bp proximal
Rr578097	regulatory region 578097			1301 bp proximal