rs30973062 SNP Detail

Summary

• ID
  rs30973062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68953211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA TCAGCTGCTT
  TGGGTGTCTT CCATTACGAT ATACACACTC CCAATACTCC CTTTGTGATA GAGTATTGAG
  AAACGGGATA AAGGATGGGA AATACGTGGT TTTGTTACAG GTATAATATC GGAAAGATGA
  TGAACAGAAA TGTGACTTCT GAGCTGGGGG TGTAGCTCAG TTCCAGTGCT CGCCTGGCGT
  R
  TTCAGTTCCC ACCATGGAAA AGCCAAACCG CTGAGCGCAC ATTAACATCT TCTTGGCGCT
  CCTCAGACTC CTTGCTTGAA AACTTTTTGT CTTGAGCTTT GAAACAGAAA GTCAGCGCTG
  GCTGTTCTTC CAGAAGACCC ACACAGCAGC TCACAACTGT TGCACGGGAA TCTGATGCTC
  TCTTCTAGCC TCCCAGATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47003967	NES10780785	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30973062					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003967	NES10780785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68953211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	354 bp distal
Gm65005	predicted gene, 65005	within coordinates
Rr578118	regulatory region 578118	1134 bp distal
Rr578119	regulatory region 578119	746 bp distal
Rr578120	regulatory region 578120	975 bp distal
Rr578121	regulatory region 578121	within coordinates
Rr578122	regulatory region 578122	514 bp distal
Rr578123	regulatory region 578123	630 bp proximal
Trim59	tripartite motif-containing 59	1136 bp upstream
Tssr29529	transcription start site region 29529	791 bp downstream
Tssr29530	transcription start site region 29530	742 bp downstream
Tssr33523	transcription start site region 33523	1219 bp upstream
Tssr33524	transcription start site region 33524	1211 bp upstream
Tssr33525	transcription start site region 33525	1115 bp upstream
Tssr33526	transcription start site region 33526	904 bp upstream
Tssr33527	transcription start site region 33527	879 bp upstream