rs30973060 SNP Detail

Summary

• ID
  rs30973060
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68953207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAAATACG TGGTTTTGTT ACAGGTATAA TATCGGAAAG
  ATGATGAACA GAAATGTGAC TTCTGAGCTG GGGGTGTAGC TCAGTTCCAG TGCTCGCCTG
  K
  CGTGTTCAGT TCCCACCATG GAAAAGCCAA ACCGCTGAGC GCACATTAAC ATCTTCTTGG
  CGCTCCTCAG ACTCCTTGCT TGAAAACTTT TTGTCTTGAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47003965	NES10780784	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30973060					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47003965	NES10780784	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68953207 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	350 bp distal
Gm65005	predicted gene, 65005	within coordinates
Rr578118	regulatory region 578118	1130 bp distal
Rr578119	regulatory region 578119	742 bp distal
Rr578120	regulatory region 578120	971 bp distal
Rr578121	regulatory region 578121	within coordinates
Rr578122	regulatory region 578122	510 bp distal
Rr578123	regulatory region 578123	634 bp proximal
Trim59	tripartite motif-containing 59	1132 bp upstream
Tssr29529	transcription start site region 29529	787 bp downstream
Tssr29530	transcription start site region 29530	738 bp downstream
Tssr33523	transcription start site region 33523	1215 bp upstream
Tssr33524	transcription start site region 33524	1207 bp upstream
Tssr33525	transcription start site region 33525	1111 bp upstream
Tssr33526	transcription start site region 33526	900 bp upstream
Tssr33527	transcription start site region 33527	875 bp upstream