rs30971046 SNP Detail

Summary

• ID
  rs30971046
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:120069218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGGGGAC AAGATAAAGC
  TGGTCACGTA GCTCAATAGT AGAACACTAA TCCGCAATGT CCACAGGCCC TGGGTTCAAT
  CCCAGAATCA ACAGGTGAAA GGGAGTTGGA GGTGGATGGT ATCCGAGGTC TCTGCTTTTT
  GCTGTGGTTG TCAATAACAG TGTGAGAGGT AGCTGATAAA TAGGTGTGTG TGAAATAAGA
  K
  GCTGCAGAGA CCTTAACCCT TTTACTGTGG GCAGCCTTAT GTTGACGCTA TGCCCTTAGT
  TTTCATTTCA GTTTTAGCAG CATTGCTAGG TTTCTGAAAT TGAACACTTC CAGGGATCTA
  TATACATTTT CCCTGTAGCC CACAACCGCA ATTTGATACC AGTAACAGAC GGTTTGAGCC
  TCTCTGTGGT GTTAGGTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48002068	NES12007488	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30971046					SNP	G	G	G	T	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002068	NES12007488	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:120069218 () rs orientation: forward

Symbol	Name	Function Class
Llph	LLP homolog, long-term synaptic facilitation (Aplysia)	1242 bp downstream
Rr385393	regulatory region 385393	283 bp upstream
Rr402292	regulatory region 402292	1134 bp downstream
Rr439960	regulatory region 439960	1165 bp distal
Rr439961	regulatory region 439961	1385 bp distal
Rr439962	regulatory region 439962	949 bp distal
Rr439963	regulatory region 439963	397 bp proximal
Rr439964	regulatory region 439964	861 bp proximal
Rr439965	regulatory region 439965	1277 bp proximal