rs30961158 SNP Detail

Summary

• ID
  rs30961158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138612271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAGTTA GACCGAGCTA
  GACACCCTGG TCCTTCATCT CCACTTCTAG AAACAAGGGC TAAAGTAAAT GTACTTTAAA
  AGTCAGAGAG CGGGTGGAGA CATAGTTTTA CAAGGTATGC ATGAGTTCCA CAAAGAACCA
  GTGTCCAGCA AAACAAACGA CCCATGTGGT CCTCACCTCC AAGAACTTCT GGGCCGATTA
  R
  GACAGGAAAG TTTTAGTGGC CTGCCCTCTA GTGTCAGCCA CGGAGAACCA CAGCTGGCTG
  GTGTTGGAAG GGAGGTTCCT TGCGGATGGA TGCAAGCCGC ATTCCAGCGT TGGGAAATGG
  ATATGGGCCG AGGGCAGGTG TTTAATAAGA GTAGGTGCTT TCCTACTTCA CAGTCCTGAA
  AGCTGGGTCT CGTTCTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001622	NES10874086	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30961158					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001622	NES10874086	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138612271 () rs orientation: forward

Symbol	Name	Function Class
Rr586228	regulatory region 586228	411 bp distal
Rr586229	regulatory region 586229	within coordinates
Rr586230	regulatory region 586230	232 bp distal
Rr586231	regulatory region 586231	18 bp proximal
Rr586232	regulatory region 586232	484 bp proximal