rs30961006 SNP Detail

Summary

• ID
  rs30961006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108427331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTATTA GGAAGAAGCA
  CAGCTCATGG GGATAGTCCT TCTAGAGATA GTAGAGACCT GATATTGTTC CTTCCTGAAT
  GGTAAAATCC CACGACAGAC AGAAGAAGAA TTTTACATAT ATCAGCTCTT CTGGCCATCC
  ACAAAGAAAA TTAAAAGGCG AGAAAGGATA AAGAGCAAAG TCCTGTTCTC CTCCCTTCCC
  R
  TAAAACCCAG AGGCTTGAAT AGAGTTCTAA GACCAGACAT CTGAAGGAAC ACTCAAATTC
  TGCAGTCTCT GCATGACTAA AGAGCAGCAA ATAAAAATAC AAGAGAATGA GCTAGAAGAT
  AGATCAACAG TTAAGAACAC AGGCTGCTCT TCCAGAGGCT GGTTTCGTTC CCAGCACCCA
  CATGGCAGCT TACAACTACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45983618	mCV23380669	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss133502616	ENSMUSSNP2864048	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss321892722	CHEV_6_108400364	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30961006					SNP	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108427331 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	562 bp downstream
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636109	regulatory region 636109	1089 bp distal
Rr636110	regulatory region 636110	221 bp proximal