rs30960854 SNP Detail

Summary

• ID
  rs30960854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138612989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATGATCC AGGTCCTAAG CCGCACCTCT GGTCTTCAAC
  ACTGACTGTA CAGGACAAAG GGAGCAGACT TTCCTGGACT TCCCGTTAAA ACAAGACTGA
  Y
  TGAGAATCTA GTGGTGTTAG CTTTGATTTG AGAATTACTA TCTCCTTTTT CGGAAATGGT
  CAAAGATTTC TATCTTGTTT TGGTCTTTTG CTTTAACACA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001644	NES10874101	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30960854					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001644	NES10874101	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138612989 () rs orientation: forward

Symbol	Name	Function Class
Rr586228	regulatory region 586228	1129 bp distal
Rr586229	regulatory region 586229	197 bp distal
Rr586230	regulatory region 586230	950 bp distal
Rr586231	regulatory region 586231	679 bp distal
Rr586232	regulatory region 586232	213 bp distal