rs30959980 SNP Detail

Summary

• ID
  rs30959980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138612893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGTGGA AGCTGGCCCT
  GCCTCCTGTA TCGTCTCAGA TGCAGTTTCT AGAAGATGAT ATTCACTGCC ACCAAGTGTT
  CACCAGCCAC TCTGGGGGTG CTATGTCTTC CAGGCACCTA TCATCCTAGT GGGGGTGGTA
  TGATAAACGG CATCCCCTCT CAGAGCATAG AATCCCCACT GGAGGGGTTT GTGTGAGCCA
  Y
  GATCCAGGTC CTAAGCCGCA CCTCTGGTCT TCAACACTGA CTGTACAGGA CAAAGGGAGC
  AGACTTTCCT GGACTTCCCG TTAAAACAAG ACTGATTGAG AATCTAGTGG TGTTAGCTTT
  GATTTGAGAA TTACTATCTC CTTTTTCGGA AATGGTCAAA GATTTCTATC TTGTTTTGGT
  CTTTTGCTTT AACACAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001640	NES10874097	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30959980					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001640	NES10874097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138612893 () rs orientation: forward

Symbol	Name	Function Class
Rr586228	regulatory region 586228	1033 bp distal
Rr586229	regulatory region 586229	101 bp distal
Rr586230	regulatory region 586230	854 bp distal
Rr586231	regulatory region 586231	583 bp distal
Rr586232	regulatory region 586232	117 bp distal