rs30959944 SNP Detail

Summary

• ID
  rs30959944
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30171436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGTGTTTGG AGGAGGAAAA AATTAAAACA ATGGTAATTC TTAACATGAA CTAGCAAATT
  GAATGTCAAC ATAGAGACAC AAAATGAATC CGTAGAGCAT TCTAACTAAT GGATAATTAA
  ATTACCCATT CTGGCCTCAT TGTGTAGTTC TTTGTACACC AGTTATATCT AACACATTTA
  AGCTTGAGAC AGGTACTCAG TCTGTACTTA GGATTATACT GTGTTGGTTC CAGTGGTGTG
  AATTATAAGT CATATTGTGA TTACCTACAA AGCAATGGCA TAGTAAGTCT TATTAAATAC
  R
  GCTTTTTTTT TTTTTTTTTT TTTTTTTGTC AAAGCCACAT GAGTTTTTCC TCAGAACATC
  ATTTGGTGCC ATCTTTCGAT CAGTATAGGT TCTATGTCTG AGGTACAACT TTTGTAAAGG
  TTAGCAGAAC GCCTCAGAGG AGGAAATTAG AGTTAACGCT TATAAGCAAC CAGGTGTTGT
  TGGAAAGCAA GCAGCTTCCT TGCCTGAGAA TCTCAAGCCA AACGATGCCC CAACGGTCTT
  TTCTTCCTCG TTCATCCAGG GTCTCCCCAA AGAGAGTTCC TGCTGTCTGG AATTTTCCCT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45484566	mCV24747267	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss134729124	ENSMUSSNP6836250	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30959944					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30171436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574719	regulatory region 574719			1429 bp proximal