rs30959248 SNP Detail

Summary

• ID
  rs30959248
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138612439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTCACCT CCAAGAACTT
  CTGGGCCGAT TAGGACAGGA AAGTTTTAGT GGCCTGCCCT CTAGTGTCAG CCACGGAGAA
  CCACAGCTGG CTGGTGTTGG AAGGGAGGTT CCTTGCGGAT GGATGCAAGC CGCATTCCAG
  CGTTGGGAAA TGGATATGGG CCGAGGGCAG GTGTTTAATA AGAGTAGGTG CTTTCCTACT
  K
  CACAGTCCTG AAAGCTGGGT CTCGTTCTGG GAACCCAGGC ACGGGACATC TTGTTCTCAT
  CAATATCTGC GTTGGGAAAT GGATATGGGC CGAGGGCAGG TGTTTAATAA GAGTAGGTGC
  GTTCCTACTT CACAGTCCTG AAAGCTGGGT CTCGTTCTGG GAACCCAGGC ACGGGACATC
  TTGTTCTCAT CAATATCTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001628	NES10874089	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30959248					SNP	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001628	NES10874089	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138612439 () rs orientation: forward

Symbol	Name	Function Class
Rr586228	regulatory region 586228	579 bp distal
Rr586229	regulatory region 586229	within coordinates
Rr586230	regulatory region 586230	400 bp distal
Rr586231	regulatory region 586231	129 bp distal
Rr586232	regulatory region 586232	316 bp proximal