rs30959246 SNP Detail

Summary

• ID
  rs30959246
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138612430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCATGTGG TCCTCACCTC
  CAAGAACTTC TGGGCCGATT AGGACAGGAA AGTTTTAGTG GCCTGCCCTC TAGTGTCAGC
  CACGGAGAAC CACAGCTGGC TGGTGTTGGA AGGGAGGTTC CTTGCGGATG GATGCAAGCC
  GCATTCCAGC GTTGGGAAAT GGATATGGGC CGAGGGCAGG TGTTTAATAA GAGTAGGTGC
  K
  TTCCTACTTC ACAGTCCTGA AAGCTGGGTC TCGTTCTGGG AACCCAGGCA CGGGACATCT
  TGTTCTCATC AATATCTGCG TTGGGAAATG GATATGGGCC GAGGGCAGGT GTTTAATAAG
  AGTAGGTGCG TTCCTACTTC ACAGTCCTGA AAGCTGGGTC TCGTTCTGGG AACCCAGGCA
  CGGGACATCT TGTTCTCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss47001626	NES10874088	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G		G	G	G
ss320981859	CHEV_3_138569633	CHEVERUD	SCREENING_POP	f	SNP						T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30959246					SNP	G	G	G	T	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001626	NES10874088	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138612430 () rs orientation: forward

Symbol	Name	Function Class
Rr586228	regulatory region 586228	570 bp distal
Rr586229	regulatory region 586229	within coordinates
Rr586230	regulatory region 586230	391 bp distal
Rr586231	regulatory region 586231	120 bp distal
Rr586232	regulatory region 586232	325 bp proximal