rs30959059 SNP Detail

Summary

• ID
  rs30959059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67979694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCCAGG CCCAGTTCAG
  CGCCCACCAA CAGTCACAGA AAAGTCACAC CCTGTAGATC GATGACTGCA CCCACTGTTC
  ACACTTGGAA TAGCACCTCT GACTTGTGCC AGGAGGTTAG AGCTGGGGAA GCAGCCATCC
  ACACATTCAT GTGTCATGGA AGTTCCCTGT GCCCTGTGGG CTGTTTATGG CTGGGTGGCT
  Y
  CTGAGTGGTC ATGTGAATCT AACAACAGTC ACAGAACTTC TTAGGCGTTT CGAGTGTCGC
  CGTTGGCAAC TGAACTACAG AGTGGGCTAA TTAAAATGTA CAACAGAGAT GTTCACCCTT
  TTGGAACTTA GCTTTAATGA TTTTGGAAGA GAGAAGGTAG GAAAACTCGC TGGATCCAGA
  GGCACTGGTT CCAAATGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47001593	NES10762714	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30959059					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001593	NES10762714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67979694 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577980	regulatory region 577980	within coordinates
Rr577981	regulatory region 577981	420 bp distal
Schip1	schwannomin interacting protein 1	Intron