rs30958764 SNP Detail

Summary

• ID
  rs30958764
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37605467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT TAGATTCTTA CATATATAAA
  W
  TTTTTTTATT CCTGTTATAA CAAGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45484747	mCV24341123	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss134807815	ENSMUSSNP2259175	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30958764					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37605467 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
D3Ertd740e	DNA segment, Chr 3, ERATO Doi 740, expressed			1983 bp distal
Rr575499	regulatory region 575499			1499 bp distal
Rr575500	regulatory region 575500			813 bp distal
Rr575501	regulatory region 575501			169 bp distal
Rr575502	regulatory region 575502			958 bp proximal
Rr575503	regulatory region 575503			1784 bp proximal