rs30958481 SNP Detail

Summary

• ID
  rs30958481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67979475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTATTAT TTCCACAAGC
  TGTTAACCTG AAGGGGGAAA AGAAAGAGTG GAAATTTAAT GCCAGAGAGG TTTGGCACTT
  TGTCAATTCG ACATTAGCTT TGAGGGCTTT TGGAATCTTG CCTGAAGTTT TCAGCACCAA
  GCAGCTAAAA GCTGTGTTTT TCTGGGCTCC TGATGGTCCT GTCCCTAAGG GATGGCATTC
  R
  GTGTTTGTGA GGGATGAACT GTGCCAGGCC CAGTTCAGCG CCCACCAACA GTCACAGAAA
  AGTCACACCC TGTAGATCGA TGACTGCACC CACTGTTCAC ACTTGGAATA GCACCTCTGA
  CTTGTGCCAG GAGGTTAGAG CTGGGGAAGC AGCCATCCAC ACATTCATGT GTCATGGAAG
  TTCCCTGTGC CCTGTGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47001585	NES10762710	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30958481					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001585	NES10762710	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67979475 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577980	regulatory region 577980	within coordinates
Rr577981	regulatory region 577981	201 bp distal
Schip1	schwannomin interacting protein 1	Intron