rs30958480 SNP Detail

Summary

• ID
  rs30958480
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67979143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCTCCT AGGATGTGTT
  TTGATCACTT TCACCACTTG ATTACCCTAA TCCATCTAGC ATCCTGTGTG AGTCCTGCTC
  TGGCCTTTTC TGATACTAGC TGAGCTTTTC AGACACTTTT CTACAGCACT TGGCCTTGTT
  TGAGAACTTA ATTCAGACCT GCGACCTGCG TGATAAGTCT ACTTGGCTGT TGCCCAGACA
  K
  TTGACCCATC TCCTGTGAGG TTTTCTCATC TGTAGAATGA AAAAGTCAGC TCTATTCTCA
  TTAGTCTCAA AGGGACACTA GGCTTAACAA GATGGTGCTT CGAGATATTT GAAACACAGG
  GTGGCATTAT CACATTATTA TTTCCACAAG CTGTTAACCT GAAGGGGGAA AAGAAAGAGT
  GGAAATTTAA TGCCAGAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001583	NES10762709	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30958480					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001583	NES10762709	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67979143 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577980	regulatory region 577980	within coordinates
Rr577981	regulatory region 577981	81 bp proximal
Schip1	schwannomin interacting protein 1	Intron