rs30956636 SNP Detail

Summary

• ID
  rs30956636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32585506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA TATGCAACCA AATTTTGGTG
  Y
  ACCATGTGTG TACCTGTGTC TGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45484148	mCV22805010	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss134750147	ENSMUSSNP394553	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320698378	CHEV_3_32430279	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30956636					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32585506 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13058	CpG island 13058			1462 bp distal
Gm66043	predicted gene, 66043			1766 bp upstream
Mfn1	mitofusin 1			Intron
				Noncoding-Transcript-Variant
Rr397636	regulatory region 397636			1804 bp downstream
Rr574981	regulatory region 574981			1882 bp distal
Rr574982	regulatory region 574982			1777 bp distal
Rr574983	regulatory region 574983			1276 bp distal
Tssr28756	transcription start site region 28756			1830 bp downstream
Tssr28757	transcription start site region 28757			1814 bp downstream
Tssr28758	transcription start site region 28758			1797 bp downstream
Tssr28759	transcription start site region 28759			1729 bp downstream
Tssr28760	transcription start site region 28760			1714 bp downstream