rs30955582 SNP Detail

Summary

• ID
  rs30955582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85985730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGG ATTTCCCGAT CAAAGTGGGC
  Y
  ACCTCACAAG CTATGTGAAA CAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45982176	mCV27547723	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T
ss51757834	NES14802203	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	C		C	C	C	T		C	C	C	C		C
ss133353872	ENSMUSSNP4559236	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss321845440	CHEV_6_85958742	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30955582					SNP	C	C	C	T	T	C	C	T	C	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51757834	NES14802203	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85985730 () rs orientation: forward

Symbol	Name	Function Class
4930553P18Rik	RIKEN cDNA 4930553P18 gene	within coordinates
Gm33319	predicted gene, 33319	839 bp upstream
Gm66378	predicted gene, 66378	within coordinates
Rr633312	regulatory region 633312	1296 bp proximal
Rr633313	regulatory region 633313	1392 bp proximal