rs30955563 SNP Detail

Summary

• ID
  rs30955563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89392702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGAATGA GCACACATTA
  AAATAATGAC CAACAGTAGC CTCATATACA GAGCACTAAA CCAGCAGCAC CACCACTTGT
  GATCACCAAA CATGGTGTGC TGTACACAGA TGCCTGTGCT GTTGTCTCAC TGGCTGCTCA
  GAGGTCTGTG TGCACTGACA TGCAATGCTG TAGAAGTAAG TGTTCAGCCC CTCTGTGCTC
  Y
  TCTGGCCTAC TGCCCATGAG GTCCAAAGTT GTTTAAGGTG CTGCTAAATA GCACATGGAT
  GCACTTTGCA TTCTTAATAA AATGAAAATA GACCATGTGA TTTTAATGTA ACCCCAGCTT
  ACTTCTAGGA ACTTCATCTA CATCTCTCTT CCCGCGCAGT ACTCTGGTTA TACCGGTCAT
  CTTTCTGTTC CTTAAGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48000421	NES11905537	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30955563					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48000421	NES11905537	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89392702 () rs orientation: forward

Symbol	Name	Function Class
Chchd6	coiled-coil-helix-coiled-coil-helix domain containing 6	Intron
Rr634129	regulatory region 634129	997 bp distal
Tssr57623	transcription start site region 57623	1802 bp downstream
Tssr62013	transcription start site region 62013	191 bp downstream