rs30955557 SNP Detail

Summary

• ID
  rs30955557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89390449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCCAAA GTTGTATTAA
  AGCTTTCTGG TTTTTGAACT TGCTGGCTGA GTCCAGCCAT TTCTCAGAGG CTGCTAGCTC
  TGCCCCAGCA GCAGTGGAGC AGCAGAGGGA GACCTCGACT CCCTTGCCAG TCTTTGCAGG
  TGTCTAAGTA CCAAGGAAAC CTGAGAAAGG TCCTGCAGAC GTGGCTGTGC ATTCTTGGGC
  Y
  ACTTTCCTCA CAGCATTTCT ATTAGCTCAT GGCTTCAGTG AAGGCCTGGA GGTCAGTAGG
  GTGATCTCAC AGGGATGCAA AGAAATAGCA TTCCTTGGGA GCCTGCCACA TAGCTAGCTC
  AAGGCCCAGG ACTCTAGGTG GGAGGCTAGA AACTTAGTTC TTTTCTTTTT TTAAAACACT
  TAGAAATTTC AGAGCCACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48000415	NES11905678	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30955557					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48000415	NES11905678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89390449 () rs orientation: forward

Symbol	Name	Function Class
Chchd6	coiled-coil-helix-coiled-coil-helix domain containing 6	Intron
Gm52910	predicted gene, 52910	1790 bp upstream
Rr634128	regulatory region 634128	362 bp distal
Rr634129	regulatory region 634129	within coordinates
Tssr57623	transcription start site region 57623	440 bp upstream