rs30955404 SNP Detail

Summary

• ID
  rs30955404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:52197652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCAAGA AGCTATAAAA
  CCCTTCCTAC AATCAGATGC TGTGAAGTAG CATGAATTAC ATACGGAAAT ATAACGAGGA
  TATATGCCTG TAGTACCTAC GTGTGTGCAG GAAGATTTTT TTTTAAGGGA GTAAGAGAGA
  GAAAGAGAGG GAGACCCAGG AGATACGTCA GCCAGGATCG AGTCCCTGGT TTTACAGCGC
  R
  TTCAGCACGG AGATGCGAGT CATAAACATT TTGTGGGCTT GGCCGAGACT ATTACGACCC
  AAATAAATGC ACTGTACGGT CTATATTCAC GGCGCTTCGA AGGGTTAGTT TTCTTTTTGC
  TCTTGTGTTT TCTTTCCGAA ACCATCCTAC CCCAGAGTCT GATCCCACAC ACTAGCCGCC
  TTGCTCTGAA GCTGGGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45982537	mCV22669438	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss133191089	ENSMUSSNP2626652	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30955404					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52197652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17429	CpG island 17429	618 bp proximal
Hoxa7	homeobox A7	Intron
Rr630374	regulatory region 630374	1471 bp distal
Rr630375	regulatory region 630375	1132 bp proximal
Rr630376	regulatory region 630376	1496 bp proximal
Tssr61004	transcription start site region 61004	1956 bp upstream
Tssr61005	transcription start site region 61005	901 bp downstream