rs30955234 SNP Detail

Summary

• ID
  rs30955234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152655078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGGGCA GTGATCACAC
  AGAGACACAG TAGTGTTCCA AGTGCTGAGA AAAATAATGG CAGCAAGAGC TCAGCCACAG
  AGGGAACTTC AATACCTCCT CACTGGCCAC GCCCACTGAC CACGCCCCAT CGTCCATCCC
  CCACTGACCA TACCCACACT AACTACAATA CACTGTCCAC CGACCTACAG GGCCTGCCCC
  R
  CTGTCCACAC CCCCACCGGC CATGCTCCGT TGACTATGCC TCCACTGACA CTGACTACGC
  CCCCTATGGC CATGGCCCCA TAAAGCTTGT AGAAGATTGG AGAAGAGAGT TGAAGAATGT
  AAAAGCTGGA CGGTGGAGAC GAGTGCAGTG AATGCCATCC TCGTGACATA ACATGGCGTT
  ATATACATGA ACACACAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45484986	mCV24026835	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss136105101	ENSMUSSNP6766747	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321029337	CHEV_3_152612405	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30955234					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152655078 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587633	regulatory region 587633	1870 bp distal
Rr587634	regulatory region 587634	909 bp proximal
Rr587635	regulatory region 587635	1664 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron