rs30954661 SNP Detail

Summary

• ID
  rs30954661
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90567624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTATCCCCA GTAAGTCAAT TAAAAGAGCA AAATTACAAG TGGGAATCAG AGAAAGATTT
  ATTCATGTGG CCATGTTGGG AAGAAGGACA AAGAGACCCA ATGAACTCTC CAAGTTTCTA
  AAGTAAGATG GAAATTTACA TGGAGGGCCA AGGATATGTA TGTCTAAGTA GTCCTAGTCA
  AGGTGTGGTC CTGCACATCA CTGATCCTGT AAGGCAGTCG GACAAGTTGT TAGAATGGTG
  GGAAATCTTT TTTTCTAGAG ACAGGTCCCC CTTTGGCTGG TGCCTTTCAC TTCTCCCACC
  W
  TGACATCGTT GGGGAACTTT CCATTTCGTT GGAGTCCATT GTTTTAATAG TCTGATAGTC
  AAATTGAGAG CCACAAAATG TTTCGTTAGA ATGTCTTCAT TTCTGCTGAG TCAGTTATGT
  TCTCAGCACA CACTTGTGGC TGCTGCTGTC AGACAACCCT GCTGCCCACT TAGAGGGACT
  GCTATCTGGT GGTTATTGTT CATGGACCCA CGCCTTACTC ATTCTACCAA GGATGCTGGC
  AGGAAGCCCT CATTCATAAA CACCTTTAAG TTCAGTGAGC CCGAGGAGAG GTGTTAAGTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45484216	mCV24984138	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30954661					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90567624 () rs orientation: forward

Symbol	Name	Function Class
Gm57853	predicted gene, 57853	1648 bp downstream
Tssr946	transcription start site region 946	327 bp downstream
Tssr30264	transcription start site region 30264	657 bp downstream
Tssr34247	transcription start site region 34247	881 bp upstream
Tssr34248	transcription start site region 34248	869 bp upstream