rs30954632 SNP Detail

Summary

• ID
  rs30954632
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89389321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCTCTC TTCTCTTCTC
  CCCTCCCCTT CTCTCTTCTC TTCTCCCCTC CCCTTCTCTC AGACAACATT GAAGCAGCCA
  GCCAGCCTGT GTATTAGTAA TTTGTCCCTG GCCTTAGGTA GAGTAGGGAG AATCAAGTGG
  AGAATAATAG AGGCTTGCCT CTATGCCCAC CAAAGTGGTT CTCTGTAAGA ATTTGCACAG
  R
  AAAACACCAG AGTTGTCTCA GTTTCTACAC TGTGTTTGAG AGGCTGACTA ACCTGCCATG
  GCTACCTTGT CTGCCGGCAT GGATACAGCC TCTGCCTTAG GATGGAAAAA GATGGCACAC
  AGGGTGTCAC AAAGCACCTG TGTCATGGTG TCCATCCACT GGATATACTG AACCACCTCT
  GATGGGAACT GAGCCAATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48000409	NES11905675	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30954632					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48000409	NES11905675	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89389321 () rs orientation: forward

Symbol	Name	Function Class
Chchd6	coiled-coil-helix-coiled-coil-helix domain containing 6	Intron
Gm52910	predicted gene, 52910	662 bp upstream
Rr634128	regulatory region 634128	105 bp proximal
Rr634129	regulatory region 634129	983 bp proximal
Tssr57623	transcription start site region 57623	1568 bp upstream