rs30952871 SNP Detail

Summary

• ID
  rs30952871
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145123409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCCCCC CCCCCACACA
  CACACACACA CACTCCATTA TCAGCTGCAA CCATTTGGGG TTTGTGGGAG TGACAGAAAC
  TTGAGAGAGC AGATTTCTCT TACTCTAATT TTGTCTTGGA TAGAACTCAC AACTTGCCTT
  TCCTATAAGG GTTGCCTAAA ACAGCATCCA GAACTAATTT TGTTCTTCAT ATTTGAAAAA
  M
  TACTCTGGGC TCCTAAGTGC ACATCCCTCT GTGAACGGGC CTGCTAGTTA TTAGTCTCAG
  GGAGACCGCA CAGTGAGGAA GTTATTGCAA CACAAGTGTC GCTGCAGGAG AATGTCCTTT
  ATTTCTCATC CAACTTACTT TCTTTAAAAA AAAAAAATAG CCTGAGTTGA ATAAAGATAG
  GTGGCAGCTC TCTGTCGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45483715	mCV23543920	ABI	CRAMUS_MOUSE	f	SNP		A	A				C	C
ss61093858	NES16613574	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A		C	C	C		A	A		A
ss136038416	ENSMUSSNP3575752	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					C
ss321008290	CHEV_3_145080618	CHEVERUD	SCREENING_POP	f	SNP											C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30952871					SNP	A	A	A	A	A	A	C	C	C	C	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61093858	NES16613574	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145123409 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
D530037P16Rik	RIKEN cDNA D530037P16 gene			1672 bp upstream
Rr586779	regulatory region 586779			260 bp proximal
Rr586780	regulatory region 586780			380 bp proximal