rs30952754 SNP Detail

Summary

• ID
  rs30952754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95409407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGCTAAGC TGTGGGCTGA
  AGATTCAAGA TCTAAGGTGC TGCCTTGATC CTCAAGAAAT TCTCATTCTT AAAAATTAGA
  AAAATCTCAG AAAGAGAAAA TTCTGCAATC AGGAAAGTAA ATCCTAATAG TAGCTGACAC
  TTTCTGAGAG ATTGCTGTGC ATCAATAGTG TCTCTGATTC TCGCGTGAGT GAGATCTCTC
  R
  GTGTTCACAG AAATCTCATC AACTTTAGTA TCACTCACTT TCTTGTTCTT TTGAGACGAG
  GTCTCTTGCC CAGGCTGGCC TCCAACTCAG TCTATAGCTG AGATTGACCT TTTAGCCTCT
  GGACCTGTTG CCTCCACCAC TCAAGTGATG GAGTTACATG TATGTTCCAG CAAGCCCAAC
  TTATTCTCAC TTTAAAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45484008	mCV24564028	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss46774907	NES10757690	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G	G	G	G	G	G
ss135511873	ENSMUSSNP1506235	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30952754					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774907	NES10757690	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95409407 () rs orientation: forward

Symbol	Name	Function Class
Ctsk	cathepsin K	Intron
Rr375407	regulatory region 375407	within coordinates
Rr580954	regulatory region 580954	1716 bp distal
Tssr30562	transcription start site region 30562	427 bp upstream