rs30951338 SNP Detail

Summary

• ID
  rs30951338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72595559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATT TCCTGTGTCC TCATCTATGG
  Y
  AGTGCTGGAT GGTTTAAACA AGTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45980941	mCV24088597	ABI	CRAMUS_MOUSE	f	SNP		T	T						C
ss51695100	NES14819627	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C	T	C	T	T		T	T	T		C
ss133286287	ENSMUSSNP1236694	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321822463	CHEV_6_72568570	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30951338					SNP	T	T	T	T	T	T	C	T	C	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695100	NES14819627	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72595559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	1381 bp distal
Gm67593	predicted gene, 67593	within coordinates
Rr399708	regulatory region 399708	1633 bp downstream
Rr632244	regulatory region 632244	1749 bp distal
Rr632245	regulatory region 632245	1819 bp distal
Rr632246	regulatory region 632246	1587 bp distal
Rr632247	regulatory region 632247	1086 bp distal
Rr632248	regulatory region 632248	827 bp proximal
Tgoln1	trans-golgi network protein	1576 bp upstream
Tssr57152	transcription start site region 57152	1658 bp downstream
Tssr61478	transcription start site region 61478	1820 bp upstream