rs30949823 SNP Detail

Summary

• ID
  rs30949823
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17752327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAAGCAT CCCTACCTGG
  AAGGAGATAC AGAACATTTC AGTTTCCTCA GGAGGAATTA TGGCCTTCCG ATTCATTATT
  CTTGCCAAGT GATAATTACC ATTCTGATTC GAGACTTCCC AGACTCATGT TAATGAATCT
  TTTAAATTTT CTTTCTTGCT TTCTTGTTTT TTACATATAA GACAATGGAA CACATCTGAA
  W
  TTTTAACTTG GTGAATATAT AGTTAAGTTG ATTTTATATC TTATATTTTT GAAGTCAGGT
  GTCTCTAGTG GCCTGGGTTC TACATTGTTA TATTTCTATC TCATCAAGTA TTTGCTTATC
  TTAAATAATT CTCTCTCTTA AACACCCCCA AATAAAAAAG AAAGTACATA GCCTTTTTTT
  CAATTTTTTA TTAGATATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45980838	mCV22806929	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss133022010	ENSMUSSNP5727745	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs30949823					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17752327 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626854	regulatory region 626854			1498 bp distal
Rr626855	regulatory region 626855			647 bp distal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant