rs30948681 SNP Detail

Summary

• ID
  rs30948681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57378714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGTGGA ATAAATCAAC
  AGAAGAAGCT AGAAAGTAAA AGGCAATGGA GAGCGGGGCC TGGCTCCGAG TGAGTGTTTT
  TGGCTCGCAG GGCACCTCCC ACCAGCCAGC TCCTGCCTCG GCTGGAATGT ACTTCAAAGG
  GAGCTAACTG AATGATAATA ACCTCTTCTG AGGGTGCTCA GCTTGATTTA AGTGTGTAGC
  Y
  GGGATTCTAC AAAAATGGAA GACCGAATTG TTTTAATTAT GAAGGGTGGG GCGAGTAGAA
  ACAAATGAAA TGAAAGCGGT ATTTTAAAAT CCCACCGTTA AAGCGGCTAT TTCAGTGCAG
  AGGTGCAGCT CACTCTTTCT TTCTCAAAGC CACGGAGACT GCAGAGGCAG ACTGCCTGGG
  AAGAGGGGGG GTGGGGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45481583	mCV22290783	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135201513	ENSMUSSNP5327367	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30948681					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57378714 () rs orientation: forward

Symbol	Name	Function Class
Rr1931	regulatory region 1931	within coordinates
Rr375020	regulatory region 375020	within coordinates
Rr577104	regulatory region 577104	within coordinates
Rr577105	regulatory region 577105	1063 bp distal
Rr577106	regulatory region 577106	892 bp distal
Rr577107	regulatory region 577107	1030 bp proximal
Wwtr1	WW domain containing transcription regulator 1	Intron