rs30947558 SNP Detail

Summary

• ID
  rs30947558
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151273007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGA
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGCATTTGT GATACTTAGA ATTTAGGCTC
  TTTTGGAGTA TTTTGTGGGA AATCATTTTT TTTTATTTTC AATCCTCAGA TAAGTTTTAA
  AAGTTTATTG TATGCACATG GAAATAAAAT CAAGATTTAC TTCAAAATTC AAGAAAATTT
  W
  AGTAGCCAAT GTCACATTGA TTCGGGATTT GCTAAAAGGG GCTCCAGTGT AAGTACCAAG
  AGACGTGCAA TTTAAATAGA TTTAAATAAT AATAGGGTTG ACTTTTGGAA ATGAAATTCC
  ATCTTAGAAA CATATTCAAA ACAGCACATA TGGTGTTTGA AAAAGAAAAT TAAATTTTAA
  AATTTTAATT ACCTTGAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45482924	mCV23272528	ABI	CRAMUS_MOUSE	f	SNP		A			T	T
ss61101141	NES16603200	PERLEGEN	MM_PANEL2	f	SNP	A		T	A		T	T	A		T	T
ss321026075	CHEV_3_151230334	CHEVERUD	SCREENING_POP	f	SNP									T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30947558					SNP	A	A	T	A	T	T	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101141	NES16603200	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151273007 () rs orientation: forward

Symbol	Name	Function Class
Rr587404	regulatory region 587404	869 bp distal
Rr587405	regulatory region 587405	400 bp distal
Rr587406	regulatory region 587406	492 bp distal