rs30947032 SNP Detail

Summary

• ID
  rs30947032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116242485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT CTGTGCATTG AAGGATTACA
  Y
  GTTGCCTATG CGTATTTCAC TATAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45980328	mCV22289027	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss133575661	ENSMUSSNP3625942	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30947032					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116242485 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17882	CpG island 17882			888 bp distal
Gm44103	predicted gene, 44103			1429 bp upstream
Gm67200	predicted gene, 67200			1471 bp upstream
Rr399855	regulatory region 399855			1218 bp downstream
Rr637176	regulatory region 637176			1482 bp distal
Rr637177	regulatory region 637177			1249 bp distal
Rr637178	regulatory region 637178			712 bp distal
Rr637179	regulatory region 637179			75 bp proximal
Rr637180	regulatory region 637180			521 bp proximal
Rr637181	regulatory region 637181			1683 bp proximal
Tssr58359	transcription start site region 58359			1299 bp downstream
Tssr58360	transcription start site region 58360			1258 bp downstream
Tssr58361	transcription start site region 58361			1242 bp downstream
Tssr62562	transcription start site region 62562			1467 bp upstream
Zfand4	zinc finger, AN1-type domain 4			Intron
				mRNA-UTR