rs30946713 SNP Detail

Summary

• ID
  rs30946713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89324913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GAGGGCAAGA GCAAGAGCTT
  Y
  AGAAGGCAGA GTAGGCACAG GGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48000021	NES11908382	PERLEGEN	MM_PANEL2	f	SNP		C	T	T	C	C	C	C	C	C		C	C	C	T		C
ss133371917	ENSMUSSNP6719304	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C						C
ss321851976	CHEV_6_89297925	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30946713					SNP	C	C	T	T	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48000021	NES11908382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89324913 () rs orientation: forward

Symbol	Name	Function Class
Gm44207	predicted gene, 44207	1368 bp downstream
Plxna1	plexin A1	Intron
Rr634109	regulatory region 634109	1674 bp distal
Rr634110	regulatory region 634110	within coordinates
Rr634111	regulatory region 634111	549 bp proximal
Tssr62006	transcription start site region 62006	649 bp downstream