rs30944785 SNP Detail

Summary

• ID
  rs30944785
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8947110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT ATAGATGTTT CCATACTTCA
  W
  TTTTTCTTCT TTCAGCTTTA TGGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45979998	mCV24757287	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	A
ss132976305	ENSMUSSNP373433	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss321738438	CHEV_6_8897110	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30944785					SNP	A	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8947110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17155	CpG island 17155	1038 bp proximal
Nxph1	neurexophilin 1	1321 bp upstream
Rr626455	regulatory region 626455	1014 bp proximal
Rr626456	regulatory region 626456	1519 bp proximal
Tssr54925	transcription start site region 54925	1317 bp upstream
Tssr54926	transcription start site region 54926	1460 bp upstream
Tssr54927	transcription start site region 54927	1498 bp upstream
Tssr54928	transcription start site region 54928	1805 bp upstream
Tssr54929	transcription start site region 54929	1841 bp upstream
Tssr54930	transcription start site region 54930	1942 bp upstream