rs30944631 SNP Detail

Summary

• ID
  rs30944631
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9151773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACTTTCAG AAATTATAGC CAATTTGTAA TTACTATGAA
  AATCGACTTT GTATGAACCA TAATAAATTC TTCCTAAAGG AAGTTTATAA TGACCTATTT
  M
  TAATTGGGAT TAGTGGTGGG AAATATCATG CCTTTTAAAA TCTTATGCTA GGTTCTCATA
  CCTAGTTAAA AATAATGTGA ACTCATTTTG AGTTTAGGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45979705	mCV23996056	ABI	CRAMUS_MOUSE	f	SNP		C	C				A
ss47787386	NES11665903	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	A	C		C	A	C		C	C		A
ss132977269	ENSMUSSNP3135894	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321738952	CHEV_6_9101773	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30944631					SNP	C	C	C	A	A	C	A	C	A	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787386	NES11665903	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9151773 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	Intron
Rr626466	regulatory region 626466	1699 bp distal