rs30943480 SNP Detail

Summary

• ID
  rs30943480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95015514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTA ATTCAACAGC ATTTTGACTC
  R
  GTAGCACTGA AGTATTGTAT GTTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45481824	mCV24558808	ABI	CRAMUS_MOUSE	f	SNP		G	A						A
ss46771562	NES10667966	PERLEGEN	MM_PANEL2	f	SNP	G			A	A	G	A	G	A	A	G		G	A	G		G
ss135509934	ENSMUSSNP3126820	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320841099	CHEV_3_94912125	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30943480					SNP	G	G	A	A	A	G	A	G	A	A	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771562	NES10667966	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95015514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13496	CpG island 13496	1092 bp distal
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	1273 bp upstream
Rr367478	regulatory region 367478	343 bp downstream
Rr580812	regulatory region 580812	1435 bp distal
Rr580813	regulatory region 580813	783 bp distal
Rr580814	regulatory region 580814	553 bp distal
Rr580815	regulatory region 580815	80 bp distal
Tssr34417	transcription start site region 34417	1306 bp upstream
Tssr34418	transcription start site region 34418	1281 bp upstream