rs30942729 SNP Detail

Summary

• ID
  rs30942729
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142404888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT ATCTTCAATC ACTTTCCCTA
  S
  TATAATAATA TGTAAATTTA AGACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss45482051	mCV23529637	ABI	CRAMUS_MOUSE	f	SNP		C	C				G
ss47013483	NES10854301	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	G	G	C
ss136016805	ENSMUSSNP6693855	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs30942729					SNP	C	C	C	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47013483	NES10854301	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142404888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13889	CpG island 13889	1345 bp proximal
Gm15540	predicted gene 15540	within coordinates
Kyat3	kynurenine aminotransferase 3	1892 bp upstream
Rr398089	regulatory region 398089	1671 bp upstream
Rr586467	regulatory region 586467	1434 bp proximal
Rr586468	regulatory region 586468	1964 bp proximal
Rr586469	regulatory region 586469	1988 bp proximal
Tssr32246	transcription start site region 32246	1899 bp upstream
Tssr32247	transcription start site region 32247	1917 bp upstream
Tssr32248	transcription start site region 32248	1940 bp upstream