rs30941819 SNP Detail

Summary

• ID
  rs30941819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121922534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAAAATGA AGTGGGTGAC GCTGGCTTCT GCTTCATAGG
  AGGGATGTAG TGGAGACAAA TGAGATGGAG CGTTGTGAAT GTTTCCCCGG GCTCCTTGAG
  R
  ACAGGTATCC CACACATTCA GGTTGTCACA AGTGTTCCGC TGCAATGCTG TTTATGCCTC
  TAATATAAAT GGATAGCATG AGTTTTCCTG TCCTGGTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45481641	mCV22324437	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss51021690	NES13907393	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		A	G	A	A		G	A	A		A
ss135735490	ENSMUSSNP2550886	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								G
ss320908654	CHEV_3_121831803	CHEVERUD	SCREENING_POP	f	SNP													A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30941819					SNP	A	A	A	A	A	G	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021690	NES13907393	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121922534 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Gm40138	predicted gene, 40138			within coordinates
Gm43158	predicted gene 43158			within coordinates
Rr584240	regulatory region 584240			1783 bp proximal