rs30940835 SNP Detail

Summary

• ID
  rs30940835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145097301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCAGACT GCAGCTCAGC TGTGGGTGTG GGCCTCCAGC
  TCTATCTGAG GATTAGCAAG AGTTCCTGAG GCTTCAAATA GCAGACTCAC CACTCTGGGC
  Y
  GGAGCACAGG ATGTACTAGT GGAGATAGGC CTGGAGAAAT AATAAAGATT TGATGTAGAA
  CATTTATTCA TTTAACAAAT ATTTATTGGG TGACTCTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45481486	mCV24239541	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss136038041	ENSMUSSNP3464149	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss321008142	CHEV_3_145054510	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30940835					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145097301 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm35133	predicted gene, 35133			within coordinates
Rr586774	regulatory region 586774			562 bp proximal
Rr586775	regulatory region 586775			886 bp proximal