rs30940281 SNP Detail

Summary

• ID
  rs30940281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89257592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCATGCT GCTAGCTTTG
  TTAAAGGGGG AGCAGAATGG ACAGGGACAA GGCACTTGGG GATAACACTG GGGGAGCTCC
  CTGGGGGTTG CACAATCAGC ACACTGTCCC CAAGGACAGT AGTCTTGGGA CATCCTAAAT
  AGCATCCTGC AGATAGCACC TTGACACAAC ACCCTGGGAA CACAATCCTG GAAATAACTC
  Y
  TTAGCACCCT CATAAGTACC TTGACATAGT ACCCTGGAAC AGCACCCTGA CACAGTACTG
  GAAACAGACT TCTGGGGGGA AGTCCTGCTT CTGCTTTCAC TTCCCTTGGT GTTAAAGACC
  TCTCCCAGTC CTGTCCTCAG TTCCCTCTGC TAGGACTGGC CTGAGCATCT GAGTCATGCG
  CCTGCAGCGG TGCTGGGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47999623	NES11911038	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30940281					SNP	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999623	NES11911038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89257592 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr634089	regulatory region 634089	within coordinates
Rr634090	regulatory region 634090	906 bp proximal