rs30939970 SNP Detail

Summary

• ID
  rs30939970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89265313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAAGGAA GGCTGCTCTG
  CCTTTTGTCC TGTGCATGCC TTGGGCTGAG GGTTCCCCAT CTCAACATTC CGGGGGGGCC
  CCCAGTGCTT CCAGGACCCA GAGTGTCACC TGTCCCGAGT GCTCCACCAT TGAACCACAC
  CAGCCCTTCC CCCTCTGCTG CCCTCCAGAG ATTCTGAGAT TCTGGGCCTT TGATGAGCTG
  Y
  TTCCTGTTTC CGGAGATTAC CCACCTCCCT CCCAACAGGT GCATATATTT GCATACAATT
  GAACCGTGAA TTCCTGGGTT TAAAATGCTA CCGGCTGCTT TCAGCTGACA GAGCCGGTCC
  TCTTAAAGGG GAAACAGGTT TCTTCCTTCT GAGAGTTTGA AACTATGGAG ATGCTGTTTT
  CTGGTCAAAG AACCTGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss47999673	NES11910462	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs30939970					SNP	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999673	NES11910462	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89265313 () rs orientation: forward

Symbol	Name	Function Class
Rr379732	regulatory region 379732	within coordinates
Rr634094	regulatory region 634094	1509 bp distal
Rr634095	regulatory region 634095	1046 bp distal
Rr634096	regulatory region 634096	within coordinates