rs30939968 SNP Detail

Summary

• ID
  rs30939968
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89262148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCAGG CCTGTCAAAT
  GGAACTCTTT TTGCTAGTAG AACATCTAGT TCTTCTGAAA TCCAGTCCCT TGCTCAGGAG
  CTGCTCTTAG AGAAAACAAT TAGTGAACAA TGAACGGCTT GTGCCAGCCC CAACTGGATC
  ATACCAGAAC AGAACAGCTC AGATTAGATG AAAAACACCA GAATACAGCA TATAAGCCCC
  S
  TTTAGACCAA TCCAGACAAG GCTAGAACTC ACCAGAATTA ACCAGCCAAG ACCAGCTCAT
  ATCAGACCAG ACCCAGCTAG ACCCTACCAG CACAGACCAG ACCAAAGAAG AATAAACCAA
  GCCAAAACAG ACTAAACAGA ACAGAACAGG TTAGATTTGA CTAATCCAGA CCAGGCTAGA
  ACATACCAGC ACAAGCCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
ss47999671	NES11910714	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C		G		G	C
ss133371431	ENSMUSSNP2304140	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C					C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
rs30939968					SNP	C	C	C	C	C	C	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999671	NES11910714	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89262148 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr379731	regulatory region 379731	within coordinates
Rr634091	regulatory region 634091	1895 bp distal
Rr634092	regulatory region 634092	29 bp proximal
Rr634093	regulatory region 634093	945 bp proximal
Rr634094	regulatory region 634094	1171 bp proximal
Rr634095	regulatory region 634095	1657 bp proximal