rs30939966 SNP Detail

Summary

• ID
  rs30939966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89262116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCATTGT CATTGATATC
  TTCATGGCAG CTCTTCTTCA GGCCTGTCAA ATGGAACTCT TTTTGCTAGT AGAACATCTA
  GTTCTTCTGA AATCCAGTCC CTTGCTCAGG AGCTGCTCTT AGAGAAAACA ATTAGTGAAC
  AATGAACGGC TTGTGCCAGC CCCAACTGGA TCATACCAGA ACAGAACAGC TCAGATTAGA
  Y
  GAAAAACACC AGAATACAGC ATATAAGCCC CCTTTAGACC AATCCAGACA AGGCTAGAAC
  TCACCAGAAT TAACCAGCCA AGACCAGCTC ATATCAGACC AGACCCAGCT AGACCCTACC
  AGCACAGACC AGACCAAAGA AGAATAAACC AAGCCAAAAC AGACTAAACA GAACAGAACA
  GGTTAGATTT GACTAATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47999669	NES11910713	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30939966					SNP	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999669	NES11910713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89262116 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr379731	regulatory region 379731	within coordinates
Rr634091	regulatory region 634091	1863 bp distal
Rr634092	regulatory region 634092	61 bp proximal
Rr634093	regulatory region 634093	977 bp proximal
Rr634094	regulatory region 634094	1203 bp proximal
Rr634095	regulatory region 634095	1689 bp proximal