rs30939964 SNP Detail

Summary

• ID
  rs30939964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89261958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAGAAG GCCACCTGTG
  CCACAAGGGT GAGAGCAGAT GCTTCTCTGT AAGAAAATCA CCTTCTGTAA CAACAAAGGA
  AGGAAAATTA GTCCTGTGCA GAGAAAGAAA GAATTCAGTC CCCATGCAGG CCGTTCTCGT
  TCCTCTCCTG GTGTGGCATC TCCATTGTCA TTGATATCTT CATGGCAGCT CTTCTTCAGG
  Y
  CTGTCAAATG GAACTCTTTT TGCTAGTAGA ACATCTAGTT CTTCTGAAAT CCAGTCCCTT
  GCTCAGGAGC TGCTCTTAGA GAAAACAATT AGTGAACAAT GAACGGCTTG TGCCAGCCCC
  AACTGGATCA TACCAGAACA GAACAGCTCA GATTAGATGA AAAACACCAG AATACAGCAT
  ATAAGCCCCC TTTAGACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47999667	NES11910712	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30939964					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999667	NES11910712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89261958 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr379731	regulatory region 379731	within coordinates
Rr634091	regulatory region 634091	1705 bp distal
Rr634092	regulatory region 634092	219 bp proximal
Rr634093	regulatory region 634093	1135 bp proximal
Rr634094	regulatory region 634094	1361 bp proximal
Rr634095	regulatory region 634095	1847 bp proximal