rs30939937 SNP Detail

Summary

• ID
  rs30939937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89325189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTTAGC CCACAGCTGT
  CCACTCTAGG GCCACCTACC TGGAGACAGC TGCTCTGGCA GTCCCTTGCA AAGCAGCTGG
  GCAACTGGTG AACATGGGAA GGCATGGACT GGGGCATCCT GGGTATCCTT ACCATCTCCA
  GCTGTTGCCT TCTTGTTTCT CATTCTTTTC CCCAGACACC AGAATCCTCT ATAACTGAAC
  R
  GCACAATGCC TCTAGAAGCT GTGGTGGAAC CACCTAGCCT CCTTGGACAC AGCCCCAAGC
  TGCACCAACA CTTACCCTAT CTTGGTGACA TAGTCTTTTC CATCCTGCCT GTGCTTCTTA
  AGCCTCAGGT CTCTATCCTA TCTGCCAAGA TGGACCTGAA ATCTGAGCTG ACCCAAGAGA
  GAAGCCAGGT CAGACTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss48000027	NES11908385	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs30939937					SNP	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48000027	NES11908385	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89325189 () rs orientation: forward

Symbol	Name	Function Class
Gm44207	predicted gene, 44207	1644 bp downstream
Plxna1	plexin A1	Intron
Rr634109	regulatory region 634109	1950 bp distal
Rr634110	regulatory region 634110	127 bp distal
Rr634111	regulatory region 634111	273 bp proximal
Rr634112	regulatory region 634112	1874 bp proximal
Tssr62006	transcription start site region 62006	373 bp downstream