rs30939935 SNP Detail

Summary

• ID
  rs30939935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89325025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG CTGTCCACTC TAGGGCCACC
  Y
  ACCTGGAGAC AGCTGCTCTG GCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48000025	NES11908384	PERLEGEN	MM_PANEL2	f	SNP		C	T	T	C	C	C		C	C	C	T		C
ss133371926	ENSMUSSNP4124438	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				C
ss321851979	CHEV_6_89298037	CHEVERUD	SCREENING_POP	f	SNP								T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30939935					SNP	C	C	T	T	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48000025	NES11908384	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89325025 () rs orientation: forward

Symbol	Name	Function Class
Gm44207	predicted gene, 44207	1480 bp downstream
Plxna1	plexin A1	Intron
Rr634109	regulatory region 634109	1786 bp distal
Rr634110	regulatory region 634110	within coordinates
Rr634111	regulatory region 634111	437 bp proximal
Tssr62006	transcription start site region 62006	537 bp downstream