rs30939873 SNP Detail

Summary

• ID
  rs30939873
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141155441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGGCTA TCAGCCTCAC
  CCAGGAAATA TTTTCCAGTG ACACTAGAAC TCTTTCAGGC CAAGCCCTCC TTCCTCTGAG
  ACTGTACCCG AGATGTGTCT CTGAACTTTA AGATACCATC TGCTCACTTA CAAATAGGCA
  TTCTTATCTC CAAAAGGGCA GGGTTCTGCA CATGAGCCTT TCACATACAT GGCAGGGATG
  K
  GGATGAAACA TCCATCAAAG ACATAATCTT TCCAGTGAAT GCTGACCAGT CAAAAGTGGC
  TATGCTGGTA ATATCTTCTG AATGATGACT TTGGTTGGTT ATCCCCCTTG TACTAATGAG
  ATAAAAATTG CTATTTTGAG GACTCATATA GGTCACACAA TATCAGTAAA TTTAAGTTGG
  TTCTGGGAGA TTTTGACTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45480360	mCV24946280	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss136004460	ENSMUSSNP1876573	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
ss320992240	CHEV_3_141112644	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30939873					SNP	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141155441 () rs orientation: forward

Symbol	Name	Function Class
Gm66152	predicted gene, 66152	within coordinates
Tssr32030	transcription start site region 32030	482 bp downstream