rs30939544 SNP Detail

Summary

• ID
  rs30939544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55447291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA ATCTGCCATT CAAAACTTCC
  R
  GTGGGGGGAG TCTCGGTTAC AACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45481409	mCV22823966	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135188627	ENSMUSSNP277362	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss320775353	CHEV_3_55343792	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30939544					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55447291 () rs orientation: forward

Symbol	Name	Function Class
Dclk1	doublecortin-like kinase 1	802 bp downstream
Gm31796	predicted gene, 31796	580 bp downstream
Rr576964	regulatory region 576964	1684 bp distal
Rr576965	regulatory region 576965	within coordinates
Rr576966	regulatory region 576966	610 bp proximal
Rr576967	regulatory region 576967	1854 bp proximal
Tssr33298	transcription start site region 33298	99 bp downstream