rs30939373 SNP Detail

Summary

• ID
  rs30939373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89235257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCAGGCT GCTGGCTTGA
  GATAGGCTCC TCTCTCATCT TGCTGCTGTT CACCTAGGTG GACATAGACT TCTGTGCTCA
  AGAAAGCCAG ACCTGACTGG GCTTCCAGGT CAGCCTTGGC TGATTAGTGT TGGGAGCCCA
  GGAAGGCACC GTAGTCTTTC TACAGTAGCT GTAGCTGTTG TTCTGCAGTG TCTGCAACAA
  Y
  GAGAAGAGCT GGGCTGGAGC TGGGGCAGGC GGGGCAGGGC TGTGGCAGAT GACTTAAGGC
  CTGGTGACCT GATTAGTTTT GTTATTTTGA CTCAGCTAGA GTTATCTGGA AAGAGGAACC
  ACAACTGAGA AGATGCTTGC TGTAAGATTA GCCTGTGGGC AAGTCTGTGA GGCATTTTCT
  AAATGGTTAA TGTACAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47999416	NES11912838	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30939373					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999416	NES11912838	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89235257 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	within coordinates
Gm66553	predicted gene, 66553	466 bp downstream
Rr634087	regulatory region 634087	1825 bp distal
Rr634088	regulatory region 634088	within coordinates
Tssr62001	transcription start site region 62001	within coordinates